Wikidata As A Semantic Framework For The Gene Wiki Initiative



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Wikidata as a semantic framework for the Gene Wiki initiative

Mar 17, 2016 Populating gene wiki infoboxes with data from wikidata. As a first use case of the data, we focused on using the gene and protein data imported into Wikidata to populate Wikipedia Gene Wiki infoboxes. In our data model, we connected Wikipedia Gene Wiki pages to Wikidata human gene items with interwiki links (Figure 2). Four Wikidata items are ...

Wikidata as a semantic framework for the Gene Wiki initiative

Mar 17, 2016 Abstract. Open biological data are distributed over many resources making them challenging to integrate, to update and to disseminate quickly. Wikidata is a growing, open community database which can serve this purpose and also provides tight integration with Wikipedia.

Wikidata as a semantic framework for the Gene Wiki initiative

Nov 19, 2015 A semantic meta-wiki called the Gene Wiki+ is produced that automatically mirrors and integrates data from the Gene Wiki and SNPedia and shows how wiki technology can be used in concert with natural language processing to provide integrated views over diverse underlying data sources.

Wikidata as a semantic framework for the Gene Wiki initiative

Nov 19, 2015 Wikidata as a semantic framework for the Gene Wiki initiative. License. Authors: Sebastian Burgstaller. The Scripps Research Institute. Andra Waagmeester. Elvira Mitraka. University of Maryland,...

Wikidata as a semantic framework for the Gene Wiki initiative

Mar 17, 2016 Wikidata as a semantic framework for the Gene Wiki initiative. Authors: Sebastian Burgstaller. The Scripps Research Institute. Andra Waagmeester. Elvira Mitraka. University of Maryland,...

Wikidata as a semantic framework for the Gene Wiki initiative. - Europe PMC

Mar 17, 2016 Populating gene wiki infoboxes with data from wikidata. As a first use case of the data, we focused on using the gene and protein data imported into Wikidata to populate Wikipedia Gene Wiki infoboxes. In our data model, we connected Wikipedia Gene Wiki pages to Wikidata human gene items with interwiki links (Figure 2). Four Wikidata items are ...

Wikidata as a semantic framework for the Gene Wiki initiative

Nov 19, 2015 Wikidata is a growing, open community database which can serve this purpose and also provides tight integration with Wikipedia. In order to improve the state of biological data, facilitate data management and dissemination, we imported all human and mouse genes, and all human and mouse proteins into Wikidata.

Wikidata as a semantic framework for the Gene Wiki initiative

Mar 17, 2016 In order to improve the state of biological data, facilitate data management and dissemination, we imported all human and mouse genes, and all human and mouse proteins into Wikidata. In total, 59 721 human genes and 73 355 mouse genes have been imported from NCBI and 27 306 human proteins and 16 728 mouse proteins have been imported from the ...

Wikidata as a semantic framework for the Gene Wiki initiative

Wikidata as a semantic framework for the Gene Wiki initiative. Chinmay Naik. 2015. Wikipedia (www.wikipedia.org) is a well-established encyclopedia and collection of free form text, operated by the Wikimedia Foundation and edited by thousands of volunteer editors.

GeneDB and Wikidata - PMC - National Center for Biotechnology Information

Oct 14, 2019 Introduction. The GeneDB website has presented genome annotation data from eukaryotic and prokaryotic pathogens 1 sequenced by the Wellcome Sanger Institute for more than 15 years. The underlying data are stored in a database, designed using the Chado 2 schema.

Wikidata as a semantic framework for the Gene Wiki initiative - Europe PMC

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Wikidata as a semantic framework for the Gene Wiki initiative

Citation details: Burgstaller-Muehlbacher,S., Waagmeester,A., Mitraka,E. et al. Wikidata as a semantic framework for the gene wiki initiative. Database (2016) Vol. 2016: article ID baw015;...

Ten quick tips for editing Wikidata | PLOS Computational Biology

Jul 20, 2023 BurgstallerMuehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, et al. Wikidata as a semantic framework for the Gene Wiki initiative. Database. 2016;baw015. pmid:26989148

A protocol for adding knowledge to Wikidata: aligning resources on

Jan 22, 2021 Wikidata, a public knowledge graph aligned with Wikipedia, is such a commons and uses unique identifiers to link knowledge in other knowledge bases. However, Wikidata may not always have the right schema for the urgent questions.

Wikidata as a semantic framework for the Gene Wiki initiative

Mar 19, 2017 Wikidata as a semantic framework for the Gene Wiki initiative (Q23712646) From Wikidata. Jump to navigation Jump to search. scientific article. edit. Language Label Description Also known as; English: Wikidata as a semantic framework for the Gene Wiki initiative.

Wikidata as a semantic framework for the Gene Wiki initiative

Mar 17, 2016 Each entity (human gene, human protein, mouse gene, mouse protein) is represented as a separate Wikidata item. Arrows represent direct links between Wikidata statements. The English language interwiki link on the human gene item points to the corresponding Gene Wiki article on the English Wikipedia. Figure 3.

Wikidata:WikiProject Gene Wiki - Wikidata

Welcome to WikiProject Gene Wiki. This is a WikiProject dedicated to make and maintiain Wikidata as a central hub of linked knowledge on Genes, Proteins, Diseases, Drugs, and related concepts. Contents. 1 Contributing. 2 The team. 2.1 Past participants / operators. 3 Bot accounts. 4 Detailed Network View. 5 How to cite us.

[PDF] WikiGenomes: an open web application for - Semantic Scholar

Jan 24, 2017 Corpus ID: 3796982. WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Timothy Putman, S. Lelong, +8 authors. Benjamin M. Good. Published in bioRxiv 24 January 2017. Biology, Computer Science. With the advancement of genome sequencing technologies, new genomes are being sequenced daily.

Wikidata as a semantic framework for the Gene Wiki initiative - bioRxiv

Nov 19, 2015 Wikidata as a semantic framework for the Gene Wiki initiative . Sebastian Burgstaller Muehlbacher1); Andra Waagmeester2); Elvira Mitraka3); Julia Turner1); Tim Putman1); Justin Leong4); Paul Pavlidis4); Lynn Schriml3); Benjamin M. Good1); Andrew I. Su1).

Wikidata:Bibliography of Wikidata - Wikidata

Wikidata Semantic Web data integration life sciences: Wikidata as a semantic framework for the Gene Wiki initiative: 2016 Wikidata Gene Wiki SPARQL Semantic Web: From Freebase to Wikidata: The Great Migration: 2016 Wikidata Freebase data migration Primary Sources Tool: Literature, Geolocation and Wikidata: 2016-05 Wikidata literature geotagging ...

An example SPARQL query, using the Wikidata SPARQL endpoint

Wikidata as a semantic framework for the Gene Wiki initiative. Article. Full-text available. Mar 2016. Sebastian Burgstaller. Andra Waagmeester. Elvira Mitraka. [...] Andrew I Su. Open biological...

Getting the Most Out of Wikidata: Semantic Technology Usage in

Oct 8, 2018 Computer Science. Wikidata@ISWC. 2021. TLDR. This paper presents Wikidated 1.0, a dataset of Wikidata's full revision history, which encodes changes betweenWikidata revisions as sets of deletions and additions of RDF triples, and presents statistical characteristics of the dataset. 3. Highly Influenced. PDF. 4 Excerpts.

Wikidata as a semantic framework for the Gene Wiki initiative. - Europe PMC

Mar 17, 2016 Europe PMC is an archive of life sciences journal literature.

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