Seqkit Homebrew Formulae





seqkit Homebrew Formulae

Homebrews package index. Cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Homebrew Formulae

Homebrew Formulae is an online package browser for Homebrew the macOS (and Linux) package manager. For more information on how to install and use Homebrew see our homepage . Browse all formulae

seqtk Homebrew Formulae

seqtk. Install command: brew install seqtk. Toolkit for processing sequences in FASTA/Q formats.

homebrew-core/seqkit.rb at master Homebrew/homebrew-core

Default formulae for the missing package manager for macOS (or Linux) - homebrew-core/seqkit.rb at master Homebrew/homebrew-core

linuxbrew-core/seqkit.rb at master Homebrew/linuxbrew-core

Formerly the core formulae for the Homebrew package manager on Linux - linuxbrew-core/seqkit.rb at master Homebrew/linuxbrew-core

How to edit a Homebrew formulae | remarkablemark

21/08/2021 Edit the formulae: brew edit . To edit the formulae with a different EDITOR like nano: EDITOR= nano brew edit . Then install the edited formulae: brew upgrade . support this site and join our Discord !

Tutorial - SeqKit - Ultrafast FASTA/Q kit

Split sequences by species. A custom ID parsing regular expression is used, ^([\w]+)\-. $ seqkit split hairpin.fa.gz -i --id-regexp "^([\w]+)\-" --two-pass. To reduce memory usage when splitting big file, we should always use flag --two-pass. Species with most miRNA hairpins. Third column is the sequences number.

Download - SeqKit - Ultrafast FASTA/Q kit

2X faster -s/--by-seq. seqkit split. fix outputting an empty file when the number of sequence equal to the split size. #293. add options to set output file prefix and extention. #296. seqkit split2. reduce memory consumption. #304. add options to set output file prefix. seqkit stats: add GC content. #294.

ssokit Homebrew Formulae

Homebrews package index

raw.githubusercontent.com

class Seqkit Formula desc "Cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang" homepage "https://bioinf.shenwei.me/seqkit" url "https ...

sleuthkit Homebrew Formulae

afflib: 3.7.19: Advanced Forensic Format: libewf: 20140812: Library for support of the Expert Witness Compression Format: libpq: 15.0: Postgres C API library

Notes - SeqKit - Ultrafast FASTA/Q kit

seqkit sample supports FASTA/Q sampling by proportion or amount. For sampling by proportion ( P ), SeqKit returns a record if a random number ( [0, 1 ]) is less than P . For sampling by amount ( N ), Seqkit firstly gets the total amount of records, and compute the proportion ( P ), and sampling by proportion ( P ).

GitHub - QueryKit/homebrew-formulae

Contribute to QueryKit/homebrew-formulae development by creating an account on GitHub.

p11-kit Homebrew Formulae

Homebrews package index. Library to load and enumerate PKCS#11 modules. https://p11-glue.freedesktop.org

The Missing Package Manager for macOS (or Linux) Homebrew

Homebrew Cask installs macOS apps, fonts and plugins and other non-open source software. $ brew install --cask firefox. Making a cask is as simple as creating a formula. $ brew create --cask foo Editing /usr/local/Homebrew/Library/Taps/homebrew/homebrew-cask/Casks/foo.rb.

seqkit 0.16.0 on Homebrew - Libraries.io

Homepage Homebrew. Install brew install seqkit SourceRank 3. Dependencies 0 Dependent packages 0 Dependent repositories 0 Total releases 1 Latest release Apr 28, 2021 First release Apr 28, 2021. Releases 0.16.0 Apr 28, 2021 ...

Here are instructions on installing via homebrew Issue #21

brew tap homebrew/science brew tap tseemann/bioinformatics-linux brew install seqkit (it works for OSX and Linux despite the -linux tap name) (eventually we will build from source and add to homebrew/science directly)

Acceptable Formulae Homebrew Documentation

Our policy is that formulae in the core tap (homebrew/core) must be open-source with a Debian Free Software Guidelines license and either built from source or producing cross-platform binaries (e.g. Java, Mono). Binary-only formulae should go in homebrew/cask. Additionally, core formulae must also not depend on casks or any other proprietary software.

seqkit module - github.com/shenwei356/seqkit - Go Packages

Method 3: Install via homebrew (latest stable version) Method 4: For Go developer (latest stable/dev version) Method 5: Docker based installation (latest stable/dev version) Command-line completion Technical details and guides for use FASTA/Q format parsing

sqlite Homebrew Formulae

Homebrews package index